I am releasing this self-assessment earlier than planned. It includes questions on R, Git and Asana.
You will still work on a pipeline next week (the 1st steps for the July project) but we are excluding the pipeline from your self-assessment.
Please continue using office hours to help ramp up for the session!
This topic has been created to give you a birds eye view of all events related to Bioinformatics.
Please refer to July 2020 Calendar for event details and any last minute changes.
- Self -assessment: Implementation of a simple Bioinformatics pipeline using R libraries. Pipeline specifications will be uploaded to drive. Questions on Git, Asana
- Deadline: 07/17
- Get all the help you need from the office hours below.
STEMCasts®: From Transcriptomics to Therapeutics. Host: Ayush Noori, Researcher, Researcher at Mass General, Freshman at Harvard University
Bioinformatics pipeline (microarray) To be added
Title: Basic Programming in R by Anya
When: Monday, July 6 at 9:00 AM PDT
Details: Please download R and RStudio and be familiar with concepts in the R training video from 6/02 before you come.
Title: PCA plots, Importing/Exporting Data, and an Introduction in R by Medhini
When: Tuesday, July 7 at 10:00 AM PDT
Details: Please download R and R Studio before coming and watch the 6/2 and 6/5 R Training videos!
Title: STEM-Away Forums & Slack by Kristen
When: Tuesday, July 7 & 14 at 9:00 AM PDT
Details: Just bring yourself and questions!
Title: Troubleshooting in R, Q&A by Alicia
When: Wednesday, July 8 at 1:00 PM PDT
Details: Come prepared with any questions regarding the R training or working in R Studio.
Title: How to read a scientific paper by Anca
When: Thursday, July 9 at 1:00 PM PDT
Details We will be going over what to focus on while reading a scientific paper so that you can understand it as well as possible!
Title: Basic & Advanced Python Programming, Data Interpretation by Priscilla
When: Friday, July 10 at 12:30 PM PDT
Title: R, Python, Collaboration by Yoga
When: Thursday, Friday, and Monday, July 9, 10, 13 at 10:00 AM PDT
Details: Come with questions about R, Python, Slack, the Stem Away website, and Google Calendar.
Title: Basic Python and Understanding Figures from the Paper by Alec
When: Tuesdays and Thursdays, July 7th, 9th, 14th and 16th from 6:00 PM PDT
Details: For those asking about figures, you should ideally come with some specific plots in mind.
Title: Data Visualization using R by Priya
When: Wednesday , July 8 at 10:00 AM PDT
Details: Install R & R Studio
Title: Handling data sets in R by Alicia
When: Monday, July 13 at 11:00 AM PDT
Details: Please download and install R and R Studio, as well as the .tar file found at the bottom of the following website: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE8671. Also, please be familiar with the concepts in the R training videos from 6/02, 6/05, 6/09, and 6/12
Title: Introduction to R for Visualization (ggplot, heatmaps, PCA) by Anya
When: Monday, July 13 at 9:00 AM PDT
Details Please download R and RStudio and be familiar with concepts in the R training video from 6/05 before you come.
Title: Basic Programming in Python (Part 1) by Goral
When: Wednesday, July 15th at 2:00 pm PDT
Details: Please download Jupyter Notebook via Anaconda before you come to this session