# Bioinformatics Workflow 2021 **URL:** https://stemaway.com/c/certificates/summer-2021-certificates/bioinformatics-workflow-2021/247.md [Latest](https://stemaway.com/latest.md) · [Categories](https://stemaway.com/categories.md) · [Tags](https://stemaway.com/tags.md) --- ## [About Bioinformatics Self-Assessments](https://stemaway.com/t/about-bioinformatics-self-assessments/9259)
**Author:** [@ddas](https://stemaway.com/u/ddas)\ **Replies:** 0
Introduction to the main workflow used in genomic data analysis by recreating published research --- ## [Bioinformatics - Level 1 - Module 2 - Session 1 - Kelly Zhang](https://stemaway.com/t/bioinformatics-level-1-module-2-session-1-kelly-zhang/8333)
**Author:** [@KellyZhang](https://stemaway.com/u/KellyZhang)\ **Replies:** 0\ **Last updated:** [June 20, 2021, 2:54pm UTC](https://stemaway.com/t/bioinformatics-level-1-module-2-session-1-kelly-zhang/8333 "2021-06-20T14:54:33Z")
Overview: Technical Area: Installing several necessary packages in R Working with RShiny, RStudio, and RStudio Cloud Familiarizing myself with the GEO database and understanding how to view extracted data Tools: RS… --- ## [Bioinformatics - Level 1 - Module 7 (Weeks 7-8) - Session 1 - Kelly Zhang](https://stemaway.com/t/bioinformatics-level-1-module-7-weeks-7-8-session-1-kelly-zhang/9097)
**Author:** [@KellyZhang](https://stemaway.com/u/KellyZhang)\ **Replies:** 0\ **Last updated:** [July 30, 2021, 2:31pm UTC](https://stemaway.com/t/bioinformatics-level-1-module-7-weeks-7-8-session-1-kelly-zhang/9097 "2021-07-30T14:31:04Z")
Overview: Technical Area: Performed the following on GEO dataset GSE4107: Statistical analysis Quality control report analysis DGE analysis Tools: R/RStudio GitHub Bioconductor packages: affy-packages, ggplot2, … --- ## [Lannawill\_Caruth - Bioinformatics (Level 1) Pathway](https://stemaway.com/t/lannawill-caruth-bioinformatics-level-1-pathway/8896)
**Author:** [@Lannawill\_Caruth](https://stemaway.com/u/Lannawill_Caruth)\ **Replies:** 0\ **Last updated:** [July 14, 2021, 2:37am UTC](https://stemaway.com/t/lannawill-caruth-bioinformatics-level-1-pathway/8896 "2021-07-14T02:37:46Z")
Module 1 Technical Area: Installed R v4 Tried out R Studio Used GEO database for the first time Tools: R Studio GEO Soft Skills: Scientific Literature Review Achievements: Wrote a few lines in R … --- ## [Hale - Bioinformatics (Level 1) Pathway](https://stemaway.com/t/hale-bioinformatics-level-1-pathway/9268)
**Author:** [@Hale](https://stemaway.com/u/Hale)\ **Replies:** 0\ **Last updated:** [September 10, 2021, 6:36pm UTC](https://stemaway.com/t/hale-bioinformatics-level-1-pathway/9268 "2021-09-10T18:36:32Z")
Placeholder for Hale --- ## [Schitoori - Bioinformatics (Level 1) Pathway](https://stemaway.com/t/schitoori-bioinformatics-level-1-pathway/8396)
**Author:** [@schitoori](https://stemaway.com/u/schitoori)\ **Replies:** 0\ **Last updated:** [June 22, 2021, 5:41pm UTC](https://stemaway.com/t/schitoori-bioinformatics-level-1-pathway/8396 "2021-06-22T17:41:09Z")
Technical: Learning different techniques to approach and understand a research paper (first general BI interns meeting) Interpretation of statistics in a research paper as well a utilization of all information provided… --- ## [Bcab - Bioinformatics (Level 1) Pathway](https://stemaway.com/t/bcab-bioinformatics-level-1-pathway/8218)
**Author:** [@bcab](https://stemaway.com/u/bcab)\ **Replies:** 0\ **Last updated:** [June 15, 2021, 8:00pm UTC](https://stemaway.com/t/bcab-bioinformatics-level-1-pathway/8218 "2021-06-15T20:00:54Z")
I will be posting my self-assessments here! --- ## [Dravie - Bioinformatics (Level 1) Pathway](https://stemaway.com/t/dravie-bioinformatics-level-1-pathway/8876)
**Author:** [@Dravie](https://stemaway.com/u/Dravie)\ **Replies:** 6\ **Last updated:** [August 28, 2021, 6:15pm UTC](https://stemaway.com/t/dravie-bioinformatics-level-1-pathway/8876 "2021-08-28T18:15:44Z")
Module 1 (REPOST) Technical Area: Installed R, RStudio, and other packages. Became familiar with coding, debugging, and data visualization. Read scientific papers in an efficient yet comprehensive manner. Tools: R R… --- ## [Naya26 - Bioinformatics (Level 1) Pathway](https://stemaway.com/t/naya26-bioinformatics-level-1-pathway/8763)
**Author:** [@naya26](https://stemaway.com/u/naya26)\ **Replies:** 6\ **Last updated:** [August 21, 2021, 2:21am UTC](https://stemaway.com/t/naya26-bioinformatics-level-1-pathway/8763 "2021-08-21T02:21:04Z")
Module 1 Technical Area: R Studio: Understanding the fundamentals of R code and getting familiar with its interface Learning how to read research papers efficiently Understanding more about the bioinformatics field, s… --- ## [Milalazarevic - Bioinformatics (Level 1) Pathway](https://stemaway.com/t/milalazarevic-bioinformatics-level-1-pathway/8760)
**Author:** [@Milalazarevic](https://stemaway.com/u/Milalazarevic)\ **Replies:** 6\ **Last updated:** [August 21, 2021, 1:02am UTC](https://stemaway.com/t/milalazarevic-bioinformatics-level-1-pathway/8760 "2021-08-21T01:02:25Z")
Module 1: Technical Area: Installed R and R Studio and reviewed its functions and packages Reviewed GitHub, Google Calendar, Slack, Trello, and When2Meet Reviewed how to read scientific papers Tools: R- Studio R Gi… --- ## [Sanisetti - Bioinformatics (Level 1) Pathway](https://stemaway.com/t/sanisetti-bioinformatics-level-1-pathway/8180)
**Author:** [@sanisetti](https://stemaway.com/u/sanisetti)\ **Replies:** 6\ **Last updated:** [August 15, 2021, 4:07am UTC](https://stemaway.com/t/sanisetti-bioinformatics-level-1-pathway/8180 "2021-08-15T04:07:43Z")
Self-Assessment 1, Same as April Technical Area An introduction to bioinformatics methods, tools, and different types of data used in bioinformatics analyses Introduction to navigating, using, and debugging in RStudio… --- ## [Sanyamahesh - Bioinformatics (Level 1) Pathway](https://stemaway.com/t/sanyamahesh-bioinformatics-level-1-pathway/8747)
**Author:** [@sanyamahesh](https://stemaway.com/u/sanyamahesh)\ **Replies:** 6\ **Last updated:** [August 14, 2021, 4:56am UTC](https://stemaway.com/t/sanyamahesh-bioinformatics-level-1-pathway/8747 "2021-08-14T04:56:18Z")
Module 1 Self Assessment Concise overview of things learned. Break it up into Technical Area, Tools, Soft Skills Technical area: Determining how to code in R and debug errors more efficiently Learning how to read and… --- ## [ShannonSaad - Bioinformatics (Level 1) Pathway](https://stemaway.com/t/shannonsaad-bioinformatics-level-1-pathway/8762)
**Author:** [@ShannonSaad](https://stemaway.com/u/ShannonSaad)\ **Replies:** 2\ **Last updated:** [August 8, 2021, 6:15am UTC](https://stemaway.com/t/shannonsaad-bioinformatics-level-1-pathway/8762 "2021-08-08T06:15:59Z")
Shannon Saad - Self-Assessment - Module 1 S2 (REPOST) 1) Things Learned: Technical Area: Rstudio: Basic packages, ggplots package, and operations of different parts Github: Made account, learned how to contribute to… --- ## [Snehasharma - Bioinformatics (Level 1) Pathway](https://stemaway.com/t/snehasharma-bioinformatics-level-1-pathway/8418)
**Author:** [@snehasharma](https://stemaway.com/u/snehasharma)\ **Replies:** 5\ **Last updated:** [August 7, 2021, 3:01pm UTC](https://stemaway.com/t/snehasharma-bioinformatics-level-1-pathway/8418 "2021-08-07T15:01:12Z")
Week 1 Self-Assessment: Overview: Technical Area: Installing RStudio, along with packages in R Familiarizing myself with basic R fundamentals, such as: coding, debugging, and syntax Understanding how to read scientif… --- ## [KellyZhang - Bioinformatics (Level 1) Pathway](https://stemaway.com/t/kellyzhang-bioinformatics-level-1-pathway/8098)
**Author:** [@KellyZhang](https://stemaway.com/u/KellyZhang)\ **Replies:** 6\ **Last updated:** [August 5, 2021, 7:34pm UTC](https://stemaway.com/t/kellyzhang-bioinformatics-level-1-pathway/8098 "2021-08-05T19:34:27Z")
Overview: Technical Area: Installing RStudio, along with ggplot and Bioconductor packages in R Familiarizing myself with basic R fundamentals, such as coding, debugging, syntax Understanding how to read scientific pap… --- ## [Leila - Bioinformatics (Level 1) Pathway](https://stemaway.com/t/leila-bioinformatics-level-1-pathway/8123)
**Author:** [@Leila](https://stemaway.com/u/Leila)\ **Replies:** 6\ **Last updated:** [July 30, 2021, 3:42pm UTC](https://stemaway.com/t/leila-bioinformatics-level-1-pathway/8123 "2021-07-30T15:42:46Z")
Week 1 Technical Area: The basics of R programming Tools: The resources linked below the module Soft Skills: Time management, Virtual collaboration and teamwork Three achievement highlights: Journal club Downloadin… --- ## [Norman\_Zvenyika - Bioinformatics (Level 1) Pathway](https://stemaway.com/t/norman-zvenyika-bioinformatics-level-1-pathway/8725)
**Author:** [@Norman\_Zvenyika](https://stemaway.com/u/Norman_Zvenyika)\ **Replies:** 1\ **Last updated:** [July 12, 2021, 2:51pm UTC](https://stemaway.com/t/norman-zvenyika-bioinformatics-level-1-pathway/8725 "2021-07-12T14:51:07Z")
Module 1 Self-Assessment Technical Area Installed RStudio Learned basic R fundamentals such coding and syntax Learned how to read scientific papers Tools RStudio R Win-Zip Soft Skills Effective time management –… --- ## [Irock194 - Bioinformatics (Level 1) Pathway](https://stemaway.com/t/irock194-bioinformatics-level-1-pathway/8336)
**Author:** [@irock194](https://stemaway.com/u/irock194)\ **Replies:** 1\ **Last updated:** [July 5, 2021, 8:27pm UTC](https://stemaway.com/t/irock194-bioinformatics-level-1-pathway/8336 "2021-07-05T20:27:29Z")
Technical: I created a metadata file using data from the GEO database. I used the Bioconductor package GEOquery to create the metadata file. I downloaded multiple packages such as Affy and tkWidgets to read multiple CE… --- ## [Giabaot - Bioinformatics (Level 1) Pathway](https://stemaway.com/t/giabaot-bioinformatics-level-1-pathway/8500)
**Author:** [@giabaot](https://stemaway.com/u/giabaot)\ **Replies:** 1\ **Last updated:** [June 27, 2021, 9:08am UTC](https://stemaway.com/t/giabaot-bioinformatics-level-1-pathway/8500 "2021-06-27T09:08:35Z")
Posting all my self-assessments for the Level 2 track on this thread!